IL_6BOK_112

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

6BOK|1|B|A|1379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_112 not in the Motif Atlas

Homologous match to IL_7RQB_052

Geometric discrepancy: 0.0575

The information below is about IL_7RQB_052

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

6BOK|1|B|C|1351
6BOK|1|B|U|1352
6BOK|1|B|A|1353
6BOK|1|B|A|1354
6BOK|1|B|G|1355
*
6BOK|1|B|C|1376
6BOK|1|B|G|1377
6BOK|1|B|A|1378
6BOK|1|B|A|1379
6BOK|1|B|G|1380

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L2

Chain EA

50S ribosomal protein L34