IL_6BOK_133

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GAAG*CC

Length

6 nucleotides

Bulged bases

6BOK|1|B|A|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_133 not in the Motif Atlas

Homologous match to IL_7RQB_073

Geometric discrepancy: 0.078

The information below is about IL_7RQB_073

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_88739.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

6BOK|1|B|G|1846
6BOK|1|B|A|1847
6BOK|1|B|A|1848
6BOK|1|B|G|1849
*
6BOK|1|B|C|1893
6BOK|1|B|C|1894

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain D

Small subunit ribosomal RNA fragment; SSU rRNA fragment

Chain E

50S ribosomal protein L2