IL_6BOK_142

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CAG*CGGG

Length

7 nucleotides

Bulged bases

6BOK|1|B|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_142 not in the Motif Atlas

Homologous match to IL_7RQB_082

Geometric discrepancy: 0.0856

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6BOK|1|B|C|2081
6BOK|1|B|A|2082
6BOK|1|B|G|2083
*
6BOK|1|B|C|2236
6BOK|1|B|G|2237
6BOK|1|B|G|2238
6BOK|1|B|G|2239

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L2

Chain Y

50S ribosomal protein L28