IL_6BOK_185

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GG*UGGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_185 not in the Motif Atlas

Geometric match to IL_6CZR_125

Geometric discrepancy: 0.1871

The information below is about IL_6CZR_125

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_99460.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

6BOK|1|DB|G|292
6BOK|1|DB|G|293
*
6BOK|1|DB|U|304
6BOK|1|DB|G|305
6BOK|1|DB|G|306
6BOK|1|DB|C|307
6BOK|1|DB|C|308

Current chains

Chain DB

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S16