3D structure

PDB id
6BOK (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.55 Å

Loop

Sequence
GGGAG*UC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BOK_203 not in the Motif Atlas
Geometric match to IL_5J7L_036
Geometric discrepancy: 0.0915
The information below is about IL_5J7L_036
Detailed Annotation
Left turn
Broad Annotation
Left turn
Motif group
IL_29346.2
Basepair signature
cWW-L-cWW-L-L
Number of instances in this motif group
3

Unit IDs

6BOK|1|DB|G|774
6BOK|1|DB|G|775
6BOK|1|DB|G|776
6BOK|1|DB|A|777
6BOK|1|DB|G|778
*
6BOK|1|DB|U|804
6BOK|1|DB|C|805

Current chains

Chain DB
16S ribosomal RNA

Nearby chains

Chain EB
Large subunit ribosomal RNA; LSU rRNA
Chain HB
50S ribosomal protein L2
Chain VC
30S ribosomal protein S11

Coloring options:


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