IL_6BOK_226

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

C(5MC)G*CAAG

Length

7 nucleotides

Bulged bases

6BOK|1|DB|A|1503

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_226 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.0944

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

6BOK|1|DB|C|1399
6BOK|1|DB|5MC|1400
6BOK|1|DB|G|1401
*
6BOK|1|DB|C|1501
6BOK|1|DB|A|1502
6BOK|1|DB|A|1503
6BOK|1|DB|G|1504

Current chains

Chain DB

16S ribosomal RNA

Nearby chains

Chain HD

Peptide chain release factor 1

Chain KC

mRNA

Chain LC

Small subunit ribosomal RNA fragment; SSU rRNA fragment