IL_6BOK_249

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

UUAAG*CGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_249 not in the Motif Atlas

Homologous match to IL_7RQB_016

Geometric discrepancy: 0.0655

The information below is about IL_7RQB_016

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

6BOK|1|EB|U|606
6BOK|1|EB|U|607
6BOK|1|EB|A|608
6BOK|1|EB|A|609|||A
6BOK|1|EB|G|609|||B
*
6BOK|1|EB|C|618|||B
6BOK|1|EB|G|619
6BOK|1|EB|G|620
6BOK|1|EB|A|621
6BOK|1|EB|G|622

Current chains

Chain EB

23S ribosomal RNA

Nearby chains

Chain JB

50S ribosomal protein L4

Chain PB

50S ribosomal protein L15