IL_6BOK_251

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6BOK|1|EB|G|801, 6BOK|1|EB|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_251 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.0702

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6BOK|1|EB|G|674
6BOK|1|EB|A|675
6BOK|1|EB|A|676
6BOK|1|EB|A|677
6BOK|1|EB|C|678
*
6BOK|1|EB|G|799
6BOK|1|EB|A|800
6BOK|1|EB|G|801
6BOK|1|EB|A|802
6BOK|1|EB|U|803
6BOK|1|EB|A|804
6BOK|1|EB|G|805
6BOK|1|EB|C|806

Current chains

Chain EB

23S ribosomal RNA

Nearby chains

Chain JB

50S ribosomal protein L4

Chain PB

50S ribosomal protein L15