IL_6BOK_264

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GCU*AAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_264 not in the Motif Atlas

Geometric match to IL_7RQB_031

Geometric discrepancy: 0.1176

The information below is about IL_7RQB_031

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_46796.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

6BOK|1|EB|G|875
6BOK|1|EB|C|876
6BOK|1|EB|U|877
*
6BOK|1|EB|A|899
6BOK|1|EB|A|900
6BOK|1|EB|A|901
6BOK|1|EB|C|902

Current chains

Chain EB

23S ribosomal RNA

Nearby chains

Chain QB

50S ribosomal protein L16

Chain ZB

50S ribosomal protein L25