IL_6BOK_289

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CUAG*CGAAG

Length

9 nucleotides

Bulged bases

6BOK|1|EB|A|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_289 not in the Motif Atlas

Homologous match to IL_7RQB_057

Geometric discrepancy: 0.0682

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6BOK|1|EB|C|1437
6BOK|1|EB|U|1438
6BOK|1|EB|A|1439
6BOK|1|EB|G|1440
*
6BOK|1|EB|C|1551
6BOK|1|EB|G|1552
6BOK|1|EB|A|1553
6BOK|1|EB|A|1554
6BOK|1|EB|G|1555

Current chains

Chain EB

23S ribosomal RNA

Nearby chains