IL_6BOK_313

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

6BOK|1|EB|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_313 not in the Motif Atlas

Homologous match to IL_4WF9_081

Geometric discrepancy: 0.0587

The information below is about IL_4WF9_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

6BOK|1|EB|G|2070
6BOK|1|EB|A|2071
*
6BOK|1|EB|U|2438
6BOK|1|EB|A|2439
6BOK|1|EB|C|2440
6BOK|1|EB|C|2441

Current chains

Chain EB

23S ribosomal RNA

Nearby chains

Chain HB

50S ribosomal protein L2

Chain LC

Small subunit ribosomal RNA fragment; SSU rRNA fragment