IL_6BOK_323

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_323 not in the Motif Atlas

Geometric match to IL_7A0S_086

Geometric discrepancy: 0.1198

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

6BOK|1|EB|A|2459
6BOK|1|EB|U|2460
6BOK|1|EB|C|2461
*
6BOK|1|EB|G|2489
6BOK|1|EB|G|2490
6BOK|1|EB|U|2491
6BOK|1|EB|U|2492
6BOK|1|EB|U|2493

Current chains

Chain EB

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L27

Chain HD

Peptide chain release factor 1

Chain QB

50S ribosomal protein L16