IL_6BOK_339

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_339 not in the Motif Atlas

Homologous match to IL_7RQB_110

Geometric discrepancy: 0.0865

The information below is about IL_7RQB_110

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_83162.5

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

6BOK|1|EB|U|2847
6BOK|1|EB|G|2848
6BOK|1|EB|U|2849
6BOK|1|EB|A|2850
6BOK|1|EB|A|2851
6BOK|1|EB|G|2852
*
6BOK|1|EB|U|2865
6BOK|1|EB|U|2866
6BOK|1|EB|G|2867
6BOK|1|EB|A|2868
6BOK|1|EB|G|2869

Current chains

Chain EB

23S ribosomal RNA

Nearby chains

Chain DB

Small subunit ribosomal RNA; SSU rRNA

Chain RB

50S ribosomal protein L17

Chain TB

50S ribosomal protein L19