IL_6BOK_348
3D structure
- PDB id
- 6BOK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.55 Å
Loop
- Sequence
- CCACCC*GGGGAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6BOK_348 not in the Motif Atlas
- Geometric match to IL_1L9A_008
- Geometric discrepancy: 0.3611
- The information below is about IL_1L9A_008
- Detailed Annotation
- tSH-tHW-tHS-cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_71294.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
6BOK|1|A|C|1259
6BOK|1|A|C|1260
6BOK|1|A|A|1261
6BOK|1|A|C|1262
6BOK|1|A|C|1263
6BOK|1|A|C|1264
*
6BOK|1|A|G|1271
6BOK|1|A|G|1272
6BOK|1|A|G|1273
6BOK|1|A|G|1274
6BOK|1|A|A|1275
6BOK|1|A|G|1276
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain AB
- 30S ribosomal protein S19
- Chain CB
- 30S ribosomal protein Thx
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