IL_6BOK_357

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GGUC*GGCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_357 not in the Motif Atlas

Homologous match to IL_5J7L_327

Geometric discrepancy: 0.5718

The information below is about IL_5J7L_327

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_43644.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

2

Unit IDs

6BOK|1|B|G|2100
6BOK|1|B|G|2101
6BOK|1|B|U|2102
6BOK|1|B|C|2103
*
6BOK|1|B|G|2186
6BOK|1|B|G|2187
6BOK|1|B|C|2188
6BOK|1|B|U|2189

Current chains

Chain B

23S ribosomal RNA

Nearby chains