IL_6BOK_373

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GUUG*CACUC

Length

9 nucleotides

Bulged bases

6BOK|1|A|U|1126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_373 not in the Motif Atlas

Homologous match to IL_6CZR_158

Geometric discrepancy: 0.2265

The information below is about IL_6CZR_158

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_40144.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

6BOK|1|A|G|1124
6BOK|1|A|U|1125
6BOK|1|A|U|1126
6BOK|1|A|G|1127
*
6BOK|1|A|C|1145
6BOK|1|A|A|1146
6BOK|1|A|C|1147
6BOK|1|A|U|1148
6BOK|1|A|C|1149

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain QA

30S ribosomal protein S9

Chain RA

30S ribosomal protein S10