IL_6BU8_007

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BU8_007 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.131

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6BU8|1|01|C|239
6BU8|1|01|C|240
6BU8|1|01|A|241
6BU8|1|01|G|242
6BU8|1|01|U|243
6BU8|1|01|A|244
6BU8|1|01|G|245
*
6BU8|1|01|C|253
6BU8|1|01|G|254
6BU8|1|01|A|255
6BU8|1|01|A|256
6BU8|1|01|C|257
6BU8|1|01|G|258

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 14

50S ribosomal protein L15

Chain 33

50S ribosomal protein L35