IL_6BU8_016

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6BU8|1|01|G|801, 6BU8|1|01|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BU8_016 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.1422

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6BU8|1|01|G|674
6BU8|1|01|A|675
6BU8|1|01|A|676
6BU8|1|01|A|677
6BU8|1|01|C|678
*
6BU8|1|01|G|799
6BU8|1|01|A|800
6BU8|1|01|G|801
6BU8|1|01|A|802
6BU8|1|01|U|803
6BU8|1|01|A|804
6BU8|1|01|G|805
6BU8|1|01|C|806

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 06

50S ribosomal protein L4

Chain 14

50S ribosomal protein L15