IL_6BU8_037

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

6BU8|1|01|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BU8_037 not in the Motif Atlas

Homologous match to IL_4WF9_041

Geometric discrepancy: 0.1442

The information below is about IL_4WF9_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6BU8|1|01|G|1031
6BU8|1|01|A|1032
6BU8|1|01|U|1033
6BU8|1|01|G|1034
*
6BU8|1|01|C|1121
6BU8|1|01|G|1122
6BU8|1|01|C|1123

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 02

5S ribosomal RNA; 5S rRNA

Chain 15

50S ribosomal protein L16

Chain 34

50S ribosomal protein L36