IL_6BU8_044

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6BU8|1|01|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BU8_044 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1416

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6BU8|1|01|C|1208
6BU8|1|01|U|1209
6BU8|1|01|G|1210
6BU8|1|01|C|1211
6BU8|1|01|G|1212
6BU8|1|01|A|1213
6BU8|1|01|A|1214
6BU8|1|01|G|1215
*
6BU8|1|01|U|1234
6BU8|1|01|G|1235
6BU8|1|01|G|1236
6BU8|1|01|A|1237
6BU8|1|01|G|1238

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L20