IL_6BU8_048
3D structure
- PDB id
- 6BU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with S1 domains 1 and 2 (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUAAG*CGAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6BU8_048 not in the Motif Atlas
- Homologous match to IL_5J7L_292
- Geometric discrepancy: 0.1524
- The information below is about IL_5J7L_292
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- UAA/GAN
- Motif group
- IL_89021.2
- Basepair signature
- cWW-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6BU8|1|01|C|1351
6BU8|1|01|U|1352
6BU8|1|01|A|1353
6BU8|1|01|A|1354
6BU8|1|01|G|1355
*
6BU8|1|01|C|1376
6BU8|1|01|G|1377
6BU8|1|01|A|1378
6BU8|1|01|U|1379
6BU8|1|01|G|1380
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 04
- 50S ribosomal protein L2
- Chain 32
- 50S ribosomal protein L34
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