IL_6BU8_110
3D structure
- PDB id
- 6BU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with S1 domains 1 and 2 (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAUGGUAG*CGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6BU8_110 not in the Motif Atlas
- Homologous match to IL_5J7L_359
- Geometric discrepancy: 0.1287
- The information below is about IL_5J7L_359
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
6BU8|1|02|C|71
6BU8|1|02|G|72
6BU8|1|02|A|73
6BU8|1|02|U|74
6BU8|1|02|G|75
6BU8|1|02|G|76
6BU8|1|02|U|77
6BU8|1|02|A|78
6BU8|1|02|G|79
*
6BU8|1|02|C|97
6BU8|1|02|G|98
6BU8|1|02|A|99
6BU8|1|02|G|100
6BU8|1|02|A|101
6BU8|1|02|G|102
6BU8|1|02|U|103
6BU8|1|02|A|104
6BU8|1|02|G|105
Current chains
- Chain 02
- 5S ribosomal RNA
Nearby chains
- Chain 01
- Large subunit ribosomal RNA; LSU rRNA
- Chain 15
- 50S ribosomal protein L16
- Chain 24
- 50S ribosomal protein L25
- Chain 28
- 50S ribosomal protein L30
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