IL_6BU8_122

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6BU8|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BU8_122 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1672

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

6BU8|1|A|G|147
6BU8|1|A|G|148
6BU8|1|A|A|149
6BU8|1|A|U|150
6BU8|1|A|A|151
6BU8|1|A|A|152
6BU8|1|A|C|153
*
6BU8|1|A|G|168
6BU8|1|A|C|169
6BU8|1|A|U|170
6BU8|1|A|A|171
6BU8|1|A|A|172
6BU8|1|A|U|173
6BU8|1|A|A|174
6BU8|1|A|C|175

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20