IL_6BU8_133

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BU8_133 not in the Motif Atlas

Geometric match to IL_5J7L_023

Geometric discrepancy: 0.1612

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6BU8|1|A|G|450
6BU8|1|A|A|451
6BU8|1|A|A|452
6BU8|1|A|G|453
6BU8|1|A|G|454
6BU8|1|A|G|455
*
6BU8|1|A|C|477
6BU8|1|A|A|478
6BU8|1|A|U|479
6BU8|1|A|U|480
6BU8|1|A|G|481
6BU8|1|A|A|482
6BU8|1|A|C|483

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16