IL_6BUW_104

3D structure

PDB id

6BUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6BUW|1|RA|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BUW_104 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1291

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

6BUW|1|RA|C|1208
6BUW|1|RA|G|1209
6BUW|1|RA|A|1210
6BUW|1|RA|U|1211
6BUW|1|RA|G|1212
6BUW|1|RA|A|1213
6BUW|1|RA|A|1214
6BUW|1|RA|G|1215
*
6BUW|1|RA|U|1234
6BUW|1|RA|G|1235
6BUW|1|RA|G|1236
6BUW|1|RA|A|1237
6BUW|1|RA|G|1238

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RU

50S ribosomal protein L20