IL_6BUW_153

3D structure

PDB id

6BUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BUW_153 not in the Motif Atlas

Homologous match to IL_7RQB_095

Geometric discrepancy: 0.1912

The information below is about IL_7RQB_095

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6BUW|1|RA|C|2466
6BUW|1|RA|C|2467
6BUW|1|RA|G|2468
6BUW|1|RA|A|2469
6BUW|1|RA|G|2470
*
6BUW|1|RA|C|2480
6BUW|1|RA|G|2481
6BUW|1|RA|G|2482
6BUW|1|RA|C|2483
6BUW|1|RA|G|2484

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RQ

50S ribosomal protein L16

Chain RZ

50S ribosomal protein L25