IL_6BUW_217

3D structure

PDB id

6BUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUUGC*GGCACUC

Length

12 nucleotides

Bulged bases

6BUW|1|XA|U|1125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BUW_217 not in the Motif Atlas

Geometric match to IL_4LFB_048

Geometric discrepancy: 0.3362

The information below is about IL_4LFB_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89862.1

Basepair signature

cWW-L-tHS-L-R-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6BUW|1|XA|G|1124
6BUW|1|XA|U|1125
6BUW|1|XA|U|1126
6BUW|1|XA|G|1127
6BUW|1|XA|C|1128
*
6BUW|1|XA|G|1143
6BUW|1|XA|G|1144
6BUW|1|XA|C|1145
6BUW|1|XA|A|1146
6BUW|1|XA|C|1147
6BUW|1|XA|U|1148
6BUW|1|XA|C|1149

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XI

30S ribosomal protein S9

Chain XJ

30S ribosomal protein S10