IL_6BY1_064

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

GG*CCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_064 not in the Motif Atlas

Geometric match to IL_7A0S_054

Geometric discrepancy: 0.2343

The information below is about IL_7A0S_054

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

6BY1|1|AY|G|2
6BY1|1|AY|G|3
*
6BY1|1|AY|C|70
6BY1|1|AY|C|71
6BY1|1|AY|C|72

Current chains

Chain AY

Valine-specific transfer RNA

Nearby chains

Chain C2

50S ribosomal protein L33

Chain CA

Large subunit ribosomal RNA; LSU rRNA

Chain CX

50S ribosomal protein L28