IL_6BY1_083

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_083 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.2683

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6BY1|1|BA|U|409
6BY1|1|BA|G|410
6BY1|1|BA|A|411
6BY1|1|BA|A|412
6BY1|1|BA|G|413
6BY1|1|BA|A|414
6BY1|1|BA|A|415
6BY1|1|BA|G|416
*
6BY1|1|BA|U|427
6BY1|1|BA|G|428
6BY1|1|BA|U|429
6BY1|1|BA|A|430
6BY1|1|BA|A|431
6BY1|1|BA|A|432
6BY1|1|BA|G|433

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BD

30S ribosomal protein S4

Chain CA

Large subunit ribosomal RNA; LSU rRNA