IL_6BY1_084

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CAG*CAGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_084 not in the Motif Atlas

Geometric match to IL_4PDB_001

Geometric discrepancy: 0.3416

The information below is about IL_4PDB_001

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_36516.3

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

6BY1|1|BA|C|440
6BY1|1|BA|A|441
6BY1|1|BA|G|442
*
6BY1|1|BA|C|492
6BY1|1|BA|A|493
6BY1|1|BA|G|494
6BY1|1|BA|A|495
6BY1|1|BA|A|496
6BY1|1|BA|G|497

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BD

30S ribosomal protein S4

Chain CA

Large subunit ribosomal RNA; LSU rRNA