IL_6BY1_120

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6BY1|1|BA|C|1400, 6BY1|1|BA|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_120 not in the Motif Atlas

Homologous match to IL_6CZR_165

Geometric discrepancy: 0.2341

The information below is about IL_6CZR_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

6BY1|1|BA|C|1399
6BY1|1|BA|C|1400
6BY1|1|BA|G|1401
*
6BY1|1|BA|C|1501
6BY1|1|BA|A|1502
6BY1|1|BA|A|1503
6BY1|1|BA|G|1504

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BE

30S ribosomal protein S5

Chain BK

30S ribosomal protein S11

Chain BW

Transfer RNA; tRNA

Chain BX

Messenger RNA