IL_6BY1_124

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CAUG*UGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_124 not in the Motif Atlas

Homologous match to IL_6CZR_168

Geometric discrepancy: 0.1994

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

6BY1|1|BA|C|1412
6BY1|1|BA|A|1413
6BY1|1|BA|U|1414
6BY1|1|BA|G|1415
*
6BY1|1|BA|U|1485
6BY1|1|BA|G|1486
6BY1|1|BA|G|1487
6BY1|1|BA|G|1488

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BL

30S ribosomal protein S12

Chain DA

Large subunit ribosomal RNA; LSU rRNA