IL_6BY1_127

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_127 not in the Motif Atlas

Homologous match to IL_5J7L_064

Geometric discrepancy: 0.2639

The information below is about IL_5J7L_064

Detailed Annotation

Single bulged A

Broad Annotation

Single bulged A

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6BY1|1|BA|U|1440
6BY1|1|BA|A|1441
6BY1|1|BA|G|1442
*
6BY1|1|BA|C|1460
6BY1|1|BA|G|1461

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BT

30S ribosomal protein S20

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DP

50S ribosomal protein L19