IL_6BY1_129

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_129 not in the Motif Atlas

Geometric match to IL_7RQB_001

Geometric discrepancy: 0.1273

The information below is about IL_7RQB_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.6

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6BY1|1|CA|G|24
6BY1|1|CA|U|25
6BY1|1|CA|G|26
6BY1|1|CA|G|27
6BY1|1|CA|A|28
6BY1|1|CA|U|29
6BY1|1|CA|G|30
*
6BY1|1|CA|C|510
6BY1|1|CA|U|511
6BY1|1|CA|G|512
6BY1|1|CA|A|513
6BY1|1|CA|A|514
6BY1|1|CA|A|515
6BY1|1|CA|C|516

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C1

50S ribosomal protein L32

Chain CQ

50S ribosomal protein L20

Chain CS

50S ribosomal protein L22