IL_6BY1_132

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

GUAAG*CGUUAUAAC

Length

14 nucleotides

Bulged bases

6BY1|1|CA|U|102

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_132 not in the Motif Atlas

Homologous match to IL_5J7L_248

Geometric discrepancy: 0.245

The information below is about IL_5J7L_248

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37015.1

Basepair signature

cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

Number of instances in this motif group

1

Unit IDs

6BY1|1|CA|G|81
6BY1|1|CA|U|82
6BY1|1|CA|A|83
6BY1|1|CA|A|84
6BY1|1|CA|G|85
*
6BY1|1|CA|C|97
6BY1|1|CA|G|98
6BY1|1|CA|U|99
6BY1|1|CA|U|100
6BY1|1|CA|A|101
6BY1|1|CA|U|102
6BY1|1|CA|A|103
6BY1|1|CA|A|104
6BY1|1|CA|C|105

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CU

50S ribosomal protein L24

Chain CY

50S ribosomal protein L29