IL_6BY1_161

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_161 not in the Motif Atlas

Homologous match to IL_4WF9_037

Geometric discrepancy: 0.109

The information below is about IL_4WF9_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

6BY1|1|CA|U|1004
6BY1|1|CA|C|1005
6BY1|1|CA|C|1006
6BY1|1|CA|C|1007
6BY1|1|CA|A|1008
6BY1|1|CA|A|1009
6BY1|1|CA|A|1010
6BY1|1|CA|G|1011
*
6BY1|1|CA|C|1150
6BY1|1|CA|A|1151

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CJ

50S ribosomal protein L13

Chain CQ

50S ribosomal protein L20