IL_6BY1_163

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_163 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.1743

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6BY1|1|CA|U|1018
6BY1|1|CA|U|1019
6BY1|1|CA|A|1020
6BY1|1|CA|A|1021
6BY1|1|CA|G|1022
6BY1|1|CA|U|1023
6BY1|1|CA|G|1024
*
6BY1|1|CA|C|1140
6BY1|1|CA|U|1141
6BY1|1|CA|A|1142
6BY1|1|CA|A|1143
6BY1|1|CA|A|1144

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C6

50S ribosomal protein L36

Chain CJ

50S ribosomal protein L13