IL_6BY1_168

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

UGUUG*CAUCA

Length

10 nucleotides

Bulged bases

6BY1|1|CA|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_168 not in the Motif Atlas

Homologous match to IL_5J7L_384

Geometric discrepancy: 0.2915

The information below is about IL_5J7L_384

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_33835.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6BY1|1|CA|U|1058
6BY1|1|CA|G|1059
6BY1|1|CA|U|1060
6BY1|1|CA|U|1061
6BY1|1|CA|G|1062
*
6BY1|1|CA|C|1076
6BY1|1|CA|A|1077
6BY1|1|CA|U|1078
6BY1|1|CA|C|1079
6BY1|1|CA|A|1080

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C5

50S ribosomal protein L10

Chain CI

50S ribosomal protein L11

Chain CM

50S ribosomal protein L16