IL_6BY1_178

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_178 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.1808

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

6BY1|1|CA|C|1357
6BY1|1|CA|G|1358
6BY1|1|CA|A|1359
6BY1|1|CA|G|1360
6BY1|1|CA|G|1361
*
6BY1|1|CA|C|1370
6BY1|1|CA|G|1371
6BY1|1|CA|U|1372
6BY1|1|CA|A|1373
6BY1|1|CA|G|1374

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C3

50S ribosomal protein L34

Chain CC

50S ribosomal protein L2

Chain CX

50S ribosomal protein L28