IL_6BY1_190

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6BY1|1|CA|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_190 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.1592

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6BY1|1|CA|C|1686
6BY1|1|CA|G|1687
6BY1|1|CA|U|1688
6BY1|1|CA|A|1689
6BY1|1|CA|A|1690
6BY1|1|CA|C|1691
*
6BY1|1|CA|G|1696
6BY1|1|CA|G|1697
6BY1|1|CA|A|1698
6BY1|1|CA|G|1699
6BY1|1|CA|A|1700
6BY1|1|CA|A|1701
6BY1|1|CA|G|1702

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain CC

50S ribosomal protein L2