IL_6BY1_198

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

GGAAG*CCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_198 not in the Motif Atlas

Geometric match to IL_6CK5_002

Geometric discrepancy: 0.3256

The information below is about IL_6CK5_002

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_36516.3

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

6BY1|1|CA|G|1845
6BY1|1|CA|G|1846
6BY1|1|CA|A|1847
6BY1|1|CA|A|1848
6BY1|1|CA|G|1849
*
6BY1|1|CA|C|1893
6BY1|1|CA|C|1894
6BY1|1|CA|C|1895

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AY

Transfer RNA; tRNA

Chain CC

50S ribosomal protein L2