IL_6BY1_206

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

6BY1|1|CA|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_206 not in the Motif Atlas

Homologous match to IL_7A0S_077

Geometric discrepancy: 0.1542

The information below is about IL_7A0S_077

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

12

Unit IDs

6BY1|1|CA|U|2081
6BY1|1|CA|A|2082
6BY1|1|CA|G|2083
*
6BY1|1|CA|U|2236
6BY1|1|CA|G|2237
6BY1|1|CA|G|2238
6BY1|1|CA|G|2239

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CC

50S ribosomal protein L2

Chain CX

50S ribosomal protein L28