IL_6BY1_214

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

6BY1|1|CA|U|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_214 not in the Motif Atlas

Homologous match to IL_5J7L_334

Geometric discrepancy: 0.425

The information below is about IL_5J7L_334

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6BY1|1|CA|U|2401
6BY1|1|CA|U|2402
6BY1|1|CA|C|2403
*
6BY1|1|CA|G|2414
6BY1|1|CA|G|2415

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C2

50S ribosomal protein L33

Chain C4

50S ribosomal protein L35

Chain CL

50S ribosomal protein L15