IL_6BY1_218

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

6BY1|1|CA|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_218 not in the Motif Atlas

Geometric match to IL_5J7L_337

Geometric discrepancy: 0.1617

The information below is about IL_5J7L_337

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

6BY1|1|CA|A|2459
6BY1|1|CA|U|2460
6BY1|1|CA|A|2461
*
6BY1|1|CA|U|2489
6BY1|1|CA|G|2490
6BY1|1|CA|U|2491
6BY1|1|CA|U|2492
6BY1|1|CA|U|2493

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain CM

50S ribosomal protein L16