IL_6BY1_229

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

UU*ACUG

Length

6 nucleotides

Bulged bases

6BY1|1|CA|C|2712, 6BY1|1|CA|U|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_229 not in the Motif Atlas

Homologous match to IL_7A0S_097

Geometric discrepancy: 0.1765

The information below is about IL_7A0S_097

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

6BY1|1|CA|U|2695
6BY1|1|CA|U|2696
*
6BY1|1|CA|A|2711
6BY1|1|CA|C|2712
6BY1|1|CA|U|2713
6BY1|1|CA|G|2714

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CN

50S ribosomal protein L17

Chain CP

50S ribosomal protein L19