IL_6BY1_232

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CUGAAG*CGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_232 not in the Motif Atlas

Geometric match to IL_5J7L_351

Geometric discrepancy: 0.1495

The information below is about IL_5J7L_351

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29471.1

Basepair signature

cWW-cWW-L-tHS-L-cWW

Number of instances in this motif group

1

Unit IDs

6BY1|1|CA|C|2806
6BY1|1|CA|U|2807
6BY1|1|CA|G|2808
6BY1|1|CA|A|2809
6BY1|1|CA|A|2810
6BY1|1|CA|G|2811
*
6BY1|1|CA|C|2889
6BY1|1|CA|G|2890
6BY1|1|CA|U|2891
6BY1|1|CA|G|2892

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C1

50S ribosomal protein L32

Chain CD

50S ribosomal protein L3

Chain CS

50S ribosomal protein L22