IL_6BY1_234

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

GGUG*CUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_234 not in the Motif Atlas

Homologous match to IL_5J7L_353

Geometric discrepancy: 0.0976

The information below is about IL_5J7L_353

Detailed Annotation

Multiple bulged bases with non-canonical cWW

Broad Annotation

Multiple bulged bases with non-canonical cWW

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

6BY1|1|CA|G|2843
6BY1|1|CA|G|2844
6BY1|1|CA|U|2845
6BY1|1|CA|G|2846
*
6BY1|1|CA|C|2870
6BY1|1|CA|U|2871
6BY1|1|CA|A|2872
6BY1|1|CA|A|2873
6BY1|1|CA|C|2874

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CD

50S ribosomal protein L3

Chain CN

50S ribosomal protein L17

Chain CP

50S ribosomal protein L19