IL_6BY1_246

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_246 not in the Motif Atlas

Homologous match to IL_7RQB_006

Geometric discrepancy: 0.1436

The information below is about IL_7RQB_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6BY1|1|DA|G|188
6BY1|1|DA|G|189
6BY1|1|DA|A|190
6BY1|1|DA|A|191
6BY1|1|DA|C|192
6BY1|1|DA|U|193
6BY1|1|DA|G|194
*
6BY1|1|DA|C|201
6BY1|1|DA|U|202
6BY1|1|DA|A|203
6BY1|1|DA|A|204
6BY1|1|DA|G|205
6BY1|1|DA|U|206
6BY1|1|DA|A|207
6BY1|1|DA|C|208

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D3

50S ribosomal protein L34

Chain DL

50S ribosomal protein L15

Chain DX

50S ribosomal protein L28