IL_6BY1_269

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_269 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.274

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6BY1|1|DA|G|875
6BY1|1|DA|C|876
6BY1|1|DA|A|877
6BY1|1|DA|A|878
6BY1|1|DA|G|879
*
6BY1|1|DA|C|898
6BY1|1|DA|A|899
6BY1|1|DA|A|900
6BY1|1|DA|C|901
6BY1|1|DA|C|902

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain BV

Transfer RNA; tRNA

Chain DM

50S ribosomal protein L16