IL_6BY1_284

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_284 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.1276

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6BY1|1|DA|A|1262
6BY1|1|DA|U|1263
6BY1|1|DA|A|1264
6BY1|1|DA|A|1265
6BY1|1|DA|G|1266
6BY1|1|DA|U|1267
6BY1|1|DA|A|1268
6BY1|1|DA|A|1269
*
6BY1|1|DA|U|2011
6BY1|1|DA|G|2012
6BY1|1|DA|A|2013
6BY1|1|DA|A|2014
6BY1|1|DA|A|2015
6BY1|1|DA|U|2016
6BY1|1|DA|U|2017

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L32

Chain DE

50S ribosomal protein L4

Chain DS

50S ribosomal protein L22